Installing 32 bit libraries to run GIPsy software
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I am new to this community so forgive me if I make any mistakes. I'm trying to run GIPsy which is a bioinformatics software for prediction of GEIs. The problem itself isn't with GIPsy but with a dependency called hmmer. The thing is... GIPsy was built to run the 32 bits version of hmmer, therefore I can't run both steps 4 and 7 of GIPsy because it depends on hmmer and my architecture is x64. Now, I read GIPsy manual and the last pages showed how to fix these problems with step 4 and 7 with the following command:
sudo apt-get install libgtk2.0-0:i386 libnss3-1d:i386 libnspr4-0d:i386 lib32nss-mdns libxml2:i386 libxslt1.1:i386 libstdc++6:i386
The problem is that this command that should install some 32 bits libraries ends up not installing them and telling that there are some packages with unmet dependencies.
Any ideas on how to solve this? Thanks in advance.
Alec
16.04 package-management 64-bit dependencies libraries
asked Feb 17 at 18:06
Alec Watanabe
62
add a comment |Â
up vote
1
down vote
favorite
I am new to this community so forgive me if I make any mistakes. I'm trying to run GIPsy which is a bioinformatics software for prediction of GEIs. The problem itself isn't with GIPsy but with a dependency called hmmer. The thing is... GIPsy was built to run the 32 bits version of hmmer, therefore I can't run both steps 4 and 7 of GIPsy because it depends on hmmer and my architecture is x64. Now, I read GIPsy manual and the last pages showed how to fix these problems with step 4 and 7 with the following command:
sudo apt-get install libgtk2.0-0:i386 libnss3-1d:i386 libnspr4-0d:i386 lib32nss-mdns libxml2:i386 libxslt1.1:i386 libstdc++6:i386
The problem is that this command that should install some 32 bits libraries ends up not installing them and telling that there are some packages with unmet dependencies.
Any ideas on how to solve this? Thanks in advance.
Alec
16.04 package-management 64-bit dependencies libraries
asked Feb 17 at 18:06
Alec Watanabe
62
add a comment |Â
up vote
1
down vote
favorite
up vote
1
down vote
favorite
I am new to this community so forgive me if I make any mistakes. I'm trying to run GIPsy which is a bioinformatics software for prediction of GEIs. The problem itself isn't with GIPsy but with a dependency called hmmer. The thing is... GIPsy was built to run the 32 bits version of hmmer, therefore I can't run both steps 4 and 7 of GIPsy because it depends on hmmer and my architecture is x64. Now, I read GIPsy manual and the last pages showed how to fix these problems with step 4 and 7 with the following command:
sudo apt-get install libgtk2.0-0:i386 libnss3-1d:i386 libnspr4-0d:i386 lib32nss-mdns libxml2:i386 libxslt1.1:i386 libstdc++6:i386
The problem is that this command that should install some 32 bits libraries ends up not installing them and telling that there are some packages with unmet dependencies.
Any ideas on how to solve this? Thanks in advance.
Alec
16.04 package-management 64-bit dependencies libraries
asked Feb 17 at 18:06
Alec Watanabe
62
I am new to this community so forgive me if I make any mistakes. I'm trying to run GIPsy which is a bioinformatics software for prediction of GEIs. The problem itself isn't with GIPsy but with a dependency called hmmer. The thing is... GIPsy was built to run the 32 bits version of hmmer, therefore I can't run both steps 4 and 7 of GIPsy because it depends on hmmer and my architecture is x64. Now, I read GIPsy manual and the last pages showed how to fix these problems with step 4 and 7 with the following command:
sudo apt-get install libgtk2.0-0:i386 libnss3-1d:i386 libnspr4-0d:i386 lib32nss-mdns libxml2:i386 libxslt1.1:i386 libstdc++6:i386
The problem is that this command that should install some 32 bits libraries ends up not installing them and telling that there are some packages with unmet dependencies.
Any ideas on how to solve this? Thanks in advance.
Alec
16.04 package-management 64-bit dependencies libraries
16.04 package-management 64-bit dependencies libraries
asked Feb 17 at 18:06
Alec Watanabe
62
asked Feb 17 at 18:06
Alec Watanabe
62
asked Feb 17 at 18:06
Alec Watanabe
62
asked Feb 17 at 18:06
Alec Watanabe
62
asked Feb 17 at 18:06
Alec Watanabe
62
62
add a comment |Â
add a comment |Â
1 Answer
1
active
oldest
votes
up vote
0
down vote
You can install the unmet dependencies with:
sudo apt-get -f install
This should fix your missing packages.
answered Feb 17 at 18:14
kukulo
992416
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
add a comment |Â
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
up vote
0
down vote
You can install the unmet dependencies with:
sudo apt-get -f install
This should fix your missing packages.
answered Feb 17 at 18:14
kukulo
992416
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
add a comment |Â
up vote
0
down vote
You can install the unmet dependencies with:
sudo apt-get -f install
This should fix your missing packages.
answered Feb 17 at 18:14
kukulo
992416
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
add a comment |Â
up vote
0
down vote
up vote
0
down vote
You can install the unmet dependencies with:
sudo apt-get -f install
This should fix your missing packages.
answered Feb 17 at 18:14
kukulo
992416
You can install the unmet dependencies with:
sudo apt-get -f install
This should fix your missing packages.
answered Feb 17 at 18:14
kukulo
992416
answered Feb 17 at 18:14
kukulo
992416
answered Feb 17 at 18:14
kukulo
992416
answered Feb 17 at 18:14
kukulo
992416
992416
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
add a comment |Â
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
apparently I have to install libjpeg62-turbo-dev but when I type: sudo apt-get -f install libjpeg62-turbo-dev it also prints an error.
– Alec Watanabe
Feb 17 at 18:29
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
Type only: sudo apt-get -f install
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
This command automatically installs the missing dependencies.
– kukulo
Feb 18 at 7:52
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
Thanks for the reply. Tried only sudo apt-get -f install, but didn't work. I will contact the developer and see if he has an alternative. I did try to fix this problem, but ended up exterminating almost all of the OS's soul. Luckily I had a backup ready.
– Alec Watanabe
Feb 18 at 19:55
add a comment |Â
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