' for reading (No such file or directory)ATHPOGON1.txt when running my script
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When I try to run my script which is
#!/bin/sh
awk 'print "extractseq 1.fasta -regions ""$1".."$2""" '
Positions2_ATHPOGON1.txt
it marks an error like
' for reading (No such file or directory)ATHPOGON1.txt.
I tried different methods but any of them work, can you help ?
Thanks
command-line scripts
edited Feb 26 at 15:09
dessert
20k55795
asked Feb 26 at 15:04
Glageosa
1
 |Â
show 2 more comments
up vote
0
down vote
favorite
1
When I try to run my script which is
#!/bin/sh
awk 'print "extractseq 1.fasta -regions ""$1".."$2""" '
Positions2_ATHPOGON1.txt
it marks an error like
' for reading (No such file or directory)ATHPOGON1.txt.
I tried different methods but any of them work, can you help ?
Thanks
command-line scripts
edited Feb 26 at 15:09
dessert
20k55795
asked Feb 26 at 15:04
Glageosa
1
1
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
1
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
1
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18
 |Â
show 2 more comments
up vote
0
down vote
favorite
1
up vote
0
down vote
favorite
1
1
When I try to run my script which is
#!/bin/sh
awk 'print "extractseq 1.fasta -regions ""$1".."$2""" '
Positions2_ATHPOGON1.txt
it marks an error like
' for reading (No such file or directory)ATHPOGON1.txt.
I tried different methods but any of them work, can you help ?
Thanks
command-line scripts
edited Feb 26 at 15:09
dessert
20k55795
asked Feb 26 at 15:04
Glageosa
1
When I try to run my script which is
#!/bin/sh
awk 'print "extractseq 1.fasta -regions ""$1".."$2""" '
Positions2_ATHPOGON1.txt
it marks an error like
' for reading (No such file or directory)ATHPOGON1.txt.
I tried different methods but any of them work, can you help ?
Thanks
command-line scripts
command-line scripts
edited Feb 26 at 15:09
dessert
20k55795
asked Feb 26 at 15:04
Glageosa
1
edited Feb 26 at 15:09
dessert
20k55795
asked Feb 26 at 15:04
Glageosa
1
edited Feb 26 at 15:09
dessert
20k55795
edited Feb 26 at 15:09
dessert
20k55795
edited Feb 26 at 15:09
dessert
20k55795
20k55795
asked Feb 26 at 15:04
Glageosa
1
asked Feb 26 at 15:04
Glageosa
1
asked Feb 26 at 15:04
Glageosa
1
1
1
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
1
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
1
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18
 |Â
show 2 more comments
1
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
1
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
1
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18
1
1
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
1
1
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
1
1
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18
 |Â
show 2 more comments
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1
What are you trying to accomplish ? please edit and add possible input and the corresponding expected output.
– Félicien
Feb 26 at 15:06
1
Well, i have a sequence of DNA, and i want to make a script that can integrate all the positions that i want in the sequence. But, this code works perfectly, its when i want to run the script that this makes this error. (Sorry for the english i'm french). I don't think that the error comes from my code
– Glageosa
Feb 26 at 15:09
1
The truncated error message (it shouldn't start with an unmatched quote character) makes me suspect that DOS line endings (with carriage returns) are involved somewhere in your workflow
– steeldriver
Feb 26 at 15:26
Alright thanks, and what can i do about that ?
– Glageosa
Feb 26 at 16:15
I've downloaded Ubuntu on my PC (i'm under Windows 10) do you think that this is involved ?
– Glageosa
Feb 26 at 16:18